This paper identifies a critical yet underexplored challenge in reasoning alignment from multiple multi-modal large language models (MLLMs): In non-stationary environments, the diverse reasoning distributions of source models often evolve unpredictably, transmitting systematic biases and drift to the target model. To address this, we formulate multi-source reasoning alignment as a constraint satisfaction problem under concept drift theory. We propose Autonomous Preference Optimization (APO), a novel framework that treats inter-model divergences not as noise, but as dynamic negative constraints. APO operates via a two-stage protocol: first, supervised bootstrapping projects the target model into the capability union of source models; second, constraint-aware optimization synthesizes a consistent consensus manifold by explicitly suppressing drifting trajectories via a multi-negative Plackett-Luce objective. Extensive experiments on chest X-ray interpretation demonstrate that our 7B model achieves superior robustness, outperforming even proprietary source models in average accuracy. Furthermore, we release CXR-MAX, a large-scale benchmark comprising 170,982 reasoning trajectories from seven large-scale MLLMs to facilitate research on reasoning alignment under drift. Code and data are available at: https://github.com/XiaoyuYoung/APO.