LLM-to-Flow Distillation: Teaching Natural Language Goals to Scientific Generators

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Summary

论文提出 LLM-to-Flow Distillation(LFD),利用冻结的 LLM 作为自适应教师构建课程并通过 DPO 将偏好蒸馏到科学生成器中,无需显式代理奖励即可用自然语言目标控制治疗性肽和小分子结构的生成设计。

Generative discovery in science requires coupling high-level scientific reasoning with the ability to generate samples respecting the structure of a design space. Yet these capabilities remain largely separated: foundation LLMs encode broad chemical and biological knowledge, while domain-specific flow- and diffusion-based generators capture the priors needed to produce valid sequences and geometries. We study how to align such scientific generators to high-level natural-language discovery goals without requiring an explicit proxy reward, which is often unavailable or poorly captured by learned predictors in experimental sciences. We introduce LLM-to-Flow Distillation (LFD), where a frozen LLM acts as an adaptive teacher for a domain-specific generator. Given a goal such as 'generate peptides with promising anticancer activity', the teacher constructs a curriculum of intermediate sub-goals aware of the flow's current capabilities, and progressively directs them toward the original discovery goal. At each round, the LLM judges sampled candidates under the current objective. These judgments induce preferences that are iteratively distilled into the generator through DPO. This procedure provides dense learning signals even when the initial model places negligible probability on designs satisfying the final goal, enabling adaptation toward poorly covered, out-of-distribution regions. Experiments on therapeutic peptides and small-molecule structure design demonstrate that LFD enables a new form of generative control: aligning arbitrary domain-specific scientific generators to scientific discovery tasks expressed via high-level natural-language goals.
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Source: https://huggingface.co/papers/2610.17246

Abstract

LLM-to-Flow Distillation aligns scientific generators with high-level discovery goals by using a frozen LLM to build adaptive curricula and distill preferences via DPO, enabling control over peptide and small-molecule design.

Generative discovery in science requires coupling high-level scientific reasoning with the ability to generate samples respecting the structure of a design space. Yet these capabilities remain largely separated: foundation LLMs encode broad chemical and biological knowledge, while domain-specific flow- anddiffusion-based generatorscapture the priors needed to produce valid sequences and geometries. We study how to align such scientific generators to high-level natural-language discovery goals without requiring an explicit proxy reward, which is often unavailable or poorly captured by learned predictors in experimental sciences. We introduceLLM-to-Flow Distillation(LFD), where a frozen LLM acts as an adaptive teacher for a domain-specific generator. Given a goal such as ‘generate peptides with promising anticancer activity’, the teacher constructs a curriculum of intermediate sub-goals aware of the flow’s current capabilities, and progressively directs them toward the original discovery goal. At each round, the LLM judges sampled candidates under the current objective. These judgments induce preferences that are iteratively distilled into the generator throughDPO. This procedure provides dense learning signals even when the initial model places negligible probability on designs satisfying the final goal, enabling adaptation toward poorly covered, out-of-distribution regions. Experiments ontherapeutic peptidesandsmall-molecule structure designdemonstrate that LFD enables a new form of generative control: aligning arbitrary domain-specific scientific generators to scientific discovery tasks expressed via high-level natural-language goals.

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