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Beyond Prompt-Based Planning: MCP-Native Graph Planning-based Biomedical Agent System

arXiv cs.AI ↗ · 2026-06-04 Cached

BioManus is an MCP-native biomedical agent system that uses graph-scaffolded planning over structured biological capabilities instead of flat prompt-based tool retrieval, achieving better context efficiency and execution accuracy on biomedical benchmarks. The system introduces a BioinfoMCP Compiler to standardize heterogeneous bioinformatics tools and organizes them as a typed heterogeneous MCP graph for scalable reasoning.

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