Tag
TracingFlow is a simulation-free framework using second-order dynamics for trajectory inference, improving accuracy in capturing high-curvature transitions in single-cell omics data.
SpaCellAgent is a self-evolving LLM-based multi-agent framework that automates end-to-end spatiotemporal trajectory analysis from natural language queries, achieving over 40% improvement in analytical efficiency while maintaining expert-level performance.
CellBRIDGE is a new method that enhances optimal transport for scRNA-seq trajectory inference by incorporating ligand-receptor interaction costs to model cell-cell communication, improving alignment and enabling interpretable in silico perturbations.