@ModengSir: 马上就到了毕业季 各位大学生/研究生 赶紧看过来 写论文有帮手了 把现在最火的 Codex 真正接进学术研究流程, 这个仓库很值得看。 academic-research-skills-codex 把一套研究技能 打包成单一 skill,…
摘要
A GitHub repository packages academic research skills into a single Codex skill, covering literature review, paper writing, peer review, and experiment planning to streamline the research workflow using OpenAI's Codex.
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马上就到了毕业季 各位大学生/研究生 赶紧看过来 写论文有帮手了
把现在最火的 Codex 真正接进学术研究流程, 这个仓库很值得看。
academic-research-skills-codex 把一套研究技能 打包成单一 skill, 可覆盖文献研究、 论文写作、稿件审阅、 研究流水线和实验规划。
对研究者来说, 它最有价值的不是 “帮你多写几段字”, 而是把不同阶段的任务 组织成更清楚的工作流。
GitHub:https://github.com/Imbad0202/academic-research-skills-codex…
Imbad0202/academic-research-skills-codex
Source: https://github.com/Imbad0202/academic-research-skills-codex
Academic Research Skills for Codex
Codex-native packaging of the Academic Research Skills suite. This is the sibling Codex distribution of Academic Research Skills for Claude Code.
This repository vendors the ARS workflow content as a single Codex skill:
skills/academic-research-suite/
SKILL.md
manifest.json
agents/openai.yaml
ars/
deep-research/
academic-paper/
academic-paper-reviewer/
academic-pipeline/
experiment-agent/
commands/
hooks/
docs/
tests/
shared/
The original Claude Code ARS checkout is not modified. Upstream content is copied
from fresh GitHub clones and adapted through the Codex router in
skills/academic-research-suite/SKILL.md.
Claude Code Version
This repository is the Codex package. For the original Claude Code version of Academic Research Skills, use Imbad0202/academic-research-skills.
Use the Claude Code repo when you want the native Claude Code skill layout, Claude-specific agent-team behavior, or the original ARS development history. Use this repo when you want the Codex-native single-suite skill.
Versioning
This Codex package is version 0.1.8. The repo-root VERSION file,
skills/academic-research-suite/SKILL.md metadata version, and
skills/academic-research-suite/manifest.json adapter_version track the
Codex package version independently of the vendored ARS suite. Vendored upstream
versions are recorded by commit in manifest.source_repositories[].
Package-level changes are summarized in CHANGELOG.md.
The vendored ARS source currently tracks
Imbad0202/academic-research-skills@96b82e82142dc95f117595c207d3e150b078e411
(v3.9.4.2). The v3.9.4.2 upstream delta is CI/release-gate-only under
.github/, which this Codex package intentionally excludes; vendored runtime
content includes ARS v3.9.4.1 temporal-verification hotfixes and the v3.9.1
through v3.9.4 workflow updates.
Install Or Update
Install the skill from this repo path. Use --method git so public and
credentialed GitHub access both work consistently:
python "$HOME/.codex/skills/.system/skill-installer/scripts/install-skill-from-github.py" \
--repo Imbad0202/academic-research-skills-codex \
--ref main \
--path skills/academic-research-suite \
--method git
To update an existing install:
rm -rf "$HOME/.codex/skills/academic-research-suite"
python "$HOME/.codex/skills/.system/skill-installer/scripts/install-skill-from-github.py" \
--repo Imbad0202/academic-research-skills-codex \
--ref main \
--path skills/academic-research-suite \
--method git
Open a new Codex conversation after installation. Existing Codex sessions may keep their old skill cache; you do not need to close unrelated Claude or Codex sessions.
Verify with /skills: you should see one ARS entry, academic-research-suite
or Academic Research .... You should not see separate academic-paper,
academic-pipeline, deep-research, or academic-paper-reviewer skills from
this package. If you do, reinstall with the update command above and open a new
Codex conversation.
Codex Docs
- Codex setup covers
installation,
ars-*aliases, optional tools, Material Passport adapters, and unsupported Claude plugin features. - Codex architecture explains the logical ARS pipeline with the Codex runtime overlay.
Usage
Invoke the suite explicitly with $academic-research-suite (singular), then
describe the research task and provide any source files, notes, draft text,
reviewer comments, or output constraints.
Use $academic-research-suite to help me plan a systematic literature review on
AI adoption in higher education quality assurance.
The Codex adapter routes the request to one of five ARS workflows:
| Workflow | Use when you need | Example prompt |
|---|---|---|
deep-research | Research question refinement, literature review, systematic review, meta-analysis, fact-checking | Use $academic-research-suite to build a systematic review protocol for AI in higher education QA. |
academic-paper | Paper outline, drafting, abstract, revision, citation formatting, AI disclosure | Use $academic-research-suite to turn these notes into an IMRaD paper outline and drafting plan. |
academic-paper-reviewer | Manuscript review, simulated peer review, editorial decision, re-review | Use $academic-research-suite to review this manuscript and produce a journal-style decision letter. |
academic-pipeline | End-to-end research-to-paper workflow with integrity gates, review, revision, and final checks | Use $academic-research-suite to run an end-to-end research-to-paper pipeline from topic to revised manuscript. |
experiment-agent | Code experiment planning, human study protocol, statistical interpretation, reproducibility validation | Use $academic-research-suite to plan a code experiment and define reproducibility checks. |
Claude-Style Aliases
Claude Code v3.7 installs /ars-* slash commands. Codex does not have the same
plugin command registry, so this package emulates the command intent inside the
single $academic-research-suite skill. Use either form:
Use $academic-research-suite: ars-plan my paper on AI governance in universities.
or, when your Codex client passes slash-prefixed text through as a normal user message:
/ars-plan my paper on AI governance in universities.
If slash input is intercepted by the client, use the plain alias form:
ars-plan my paper on AI governance in universities.
| Claude command | Codex alias | Routed workflow |
|---|---|---|
/ars-plan | ars-plan | academic-paper plan mode |
/ars-outline | ars-outline | academic-paper outline-only mode |
/ars-abstract | ars-abstract | academic-paper abstract-only mode |
/ars-lit-review | ars-lit-review | academic-paper lit-review mode |
/ars-citation-check | ars-citation-check | academic-paper citation-check mode |
/ars-disclosure | ars-disclosure | academic-paper disclosure mode |
/ars-format-convert | ars-format-convert | academic-paper format-convert mode |
/ars-revision-coach | ars-revision-coach | academic-paper revision-coach mode |
/ars-revision | ars-revision | academic-paper revision mode |
/ars-full | ars-full | academic-pipeline full workflow |
Working Pattern
For best results, start with the workflow goal and the current state of your materials:
Use $academic-research-suite.
Goal: write a journal article.
Current materials: I have a literature matrix and rough findings, but no outline.
Output needed now: paper architecture and missing-evidence checklist.
Constraints: English, APA 7, higher education policy audience.
If you only have a paper topic or broad research direction and do not yet have a clear research question, the Codex router should start with ARS Socratic scoping:
Use $academic-research-suite.
I want to write a paper on AI adoption in higher education quality assurance.
I do not yet have a clear research question.
Please use SCR / Socratic dialogue to help me narrow the question first; do not write an outline yet.
Expected route: deep-research socratic mode first. ARS should ask narrowing
questions and should not produce an outline or draft until the research question
has converged.
For review tasks, provide the manuscript or a path to the manuscript, plus the review mode you want:
Use $academic-research-suite to review this paper.
Mode: full review.
Focus: methodology, contribution, citation integrity, and likely desk-reject risks.
Output: reviewer reports plus editorial decision letter.
For staged pipelines, ask for a checkpoint instead of asking Codex to run the entire process silently:
Use $academic-research-suite to start an academic-pipeline run.
Begin with Stage 0 intake and stop after producing the pipeline dashboard.
Smoke Tests
In a new Codex conversation:
/skills
Expected: one ARS entry only.
Then test Socratic routing:
Use $academic-research-suite.
I want to write a paper on AI adoption in higher education quality assurance.
I do not yet have a clear research question.
Expected: route to deep-research socratic mode and ask narrowing questions.
CLI smoke test:
codex exec --ephemeral --sandbox read-only \
-C /path/to/academic-research-skills-codex \
'Use $academic-research-suite. Router smoke test only. User request to classify: I want to write a paper on AI adoption in higher education quality assurance, but I do not yet have a clear research question. According to the academic-research-suite router, classify the workflow and mode.'
Non-Blocking Codex Warnings
These Codex messages do not mean ARS failed to install:
[features].codex_hooks is deprecated— update your Codex config when convenient; ARS Codex does not require hooks for normal use.hooks need review before they can run— review those hooks separately if you use them. ARS Codex treats vendored Claude hooks as traceability metadata and does not require them.
Codex Adapter Behavior
ARS was originally written for Claude Code. In this Codex package:
- The vendored
agents/*.mdfiles are used as role and phase prompts. - The vendored
commands/ars-*.mdfiles are prompt recipes only. Codex does not register them as slash commands. - The vendored
hooks/hooks.jsonfile is preserved for upstream traceability only. Codex does not install Claude Code hooks from this package. - Codex does not automatically spawn background agents unless you explicitly ask for delegated or parallel agent work.
- Web/source verification uses Codex browsing and must cite sources when current or external facts matter.
- Cross-model verification is disabled by default. When explicitly requested in
this Codex package, configure
ARS_CROSS_MODEL=claude-opus-4.7andANTHROPIC_API_KEY; the external reviewer uses Anthropic Claude Opus 4.7 API, not Codex/OpenAI API. Upstream GPT/Gemini secondary-dispatch instructions are ignored unless this explicit Anthropic configuration is present. - Upstream references to a “fresh Claude Code session” mean a new Codex conversation in this package; Material Passport reset semantics still apply.
- If a citation, source, statistic, or journal policy cannot be verified, Codex should mark it as unverified rather than invent support.
ARS v3.9.4.2 Parity
This package aims for the same user-facing workflow content as upstream ARS v3.9.4.2 where Codex has an equivalent concept.
| Upstream ARS feature | Codex package behavior |
|---|---|
| One installable plugin | One installable Codex skill at skills/academic-research-suite |
/ars-* slash commands | Emulated as ars-* aliases through the skill router; not native slash commands |
Four upstream skills auto-discovered from skills/ symlinks | Single Codex router skill selects the workflow and reads the vendored workflow WORKFLOW.md files |
| Plugin-shipped agents | Agent files are role/phase prompts; Codex runs them inline unless the user explicitly asks for delegated subagents |
model: opus / model: sonnet command routing | Treated as Claude metadata; Codex uses the active model |
| SessionStart and SubagentStop hooks | Vendored for traceability only; Codex does not install or execute Claude hooks |
| Plugin marketplace update / auto-update | Not available here; update by reinstalling or pulling this Codex repo |
| Claude Code Agent Team | Not automatic; Codex subagents require an explicit user request for delegation or parallel agents |
| Cross-model GPT/Gemini dispatch from upstream docs | Disabled; Codex package only supports optional Anthropic Claude Opus 4.7 review when explicitly configured |
Optional Claude Opus 4.7 Reviewer API
For reviewer calibration or cross-model devil’s advocate checks:
export ANTHROPIC_API_KEY="<your-anthropic-api-key>"
export ARS_CROSS_MODEL="claude-opus-4.7"
Then ask for cross-model verification explicitly in the prompt. Without both environment variables, ARS Codex falls back to single-runtime review and should report that the Claude Opus 4.7 verifier was unavailable.
Support And Sponsorship
If ARS Codex helps your research workflow, you can support maintenance through Buy Me a Coffee.
Security
Do not open public issues for vulnerabilities. Follow
SECURITY.md for private reporting, and see the
release readiness and security report for
the latest local validation summary.
File Layout For Advanced Use
The entry point is:
skills/academic-research-suite/SKILL.md
Workflow content is under:
skills/academic-research-suite/ars/<workflow>/
Shared schemas, compliance rules, and cross-workflow contracts are under:
skills/academic-research-suite/ars/shared/
When debugging or updating the package, preserve these paths. Many ARS workflow
files cross-reference shared/, scripts/, examples/, and other workflow
directories.
Update Policy
Updates sync selected upstream ARS content into skills/academic-research-suite/ars/.
Do not mirror the Claude Code repo blindly; exclude Claude/plugin loader files
such as .claude/, .claude-plugin/, .github/, source .gitignore, and
symlink-only alias directories that are not needed in Codex.
Inactive Upstream Scripts
Some upstream maintenance scripts are vendored but intentionally inactive in
this Codex package because they require non-vendored Claude Code inputs such as
.claude/CLAUDE.md. See inactive_upstream_scripts in
skills/academic-research-suite/manifest.json before wiring any upstream script
into Codex CI.
Contributors And Acknowledgements
Cheng-I Wu - Maintainer of the ARS suite and this Codex sibling distribution.
Codex - Assisted with the Codex adapter packaging, router-policy hardening, test fixes, and release-readiness review under maintainer direction.
Vendored upstream ARS contributors are acknowledged in
skills/academic-research-suite/ars/README.md.
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