computational-chemistry

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#computational-chemistry

Magnolia: A Persistent-Memory Agent Framework for Computational Chemistry

arXiv cs.AI ↗ · 2026-10-21 Cached

论文提出 Magnolia,一个面向计算化学的持久记忆 AI 智能体框架,采用三层记忆系统(会话、项目、跨项目规则),整合对接、分子动力学与量子化学计算流程;在四个案例中验证了记忆机制显著提升任务检查通过率。

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#computational-chemistry

Response-state Learning for Transferable Vibrational Spectroscopic Characterization with Electron Prior

arXiv cs.LG ↗ · 2026-09-25 Cached

This paper introduces SO(3) Equivariant Neural Kalman Networks (SENK) for accurate and transferable vibrational spectral prediction, outperforming existing methods and integrating tensor prediction with physics-informed calibration.

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EnSol: an environment-aware graph neural network for molecular solubility prediction

arXiv cs.LG ↗ · 2026-09-21 Cached

EnSol is an environment-aware graph neural network that predicts molecular solubility by representing solutes and solvents as graphs and using cross-attention to model interactions, with probabilistic outputs to capture temperature effects and experimental uncertainty. It achieves state-of-the-art performance on benchmark datasets, validated experimentally.

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Predicting Collision Cross Sections with GRACE: Geometric Residual Adduct Conditioning via Early-fusion

arXiv cs.LG ↗ · 2026-09-14 Cached

GRACE is a novel 3D predictor for collision cross sections in ion mobility mass spectrometry, using geometric residual adduct conditioning via early fusion to improve accuracy and generalization.

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Autonomous Chemical Mechanistic Discovery through Agentic Reasoning and Validation

arXiv cs.AI ↗ · 2026-09-12 Cached

ARCHE is an autonomous agentic system that integrates reasoning and computational models to automate the discovery and validation of chemical reaction mechanisms, validated through various chemical scenarios.

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MolEmb: Multimodal Large Language Models Can Be Strong Molecular Embedding Models

arXiv cs.AI ↗ · 2026-08-26 Cached

The paper introduces MolEmb, a lightweight framework that adapts multimodal large language models for general molecular embedding, enabling context-aware representations and cross-modal retrieval, along with a diagnostic benchmark MolCAR.

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#computational-chemistry

Computational chemistry, Locally? My rant on SSH

Hacker News Top ↗ · 2026-07-21 Cached

The author rants about the clunkiness of using SSH and VPN to access university HPC clusters for computational chemistry, arguing that the friction discourages independent researchers from doing work and advocates for local computations.

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MDForge: Agentic Molecular Dynamics Pipeline Design under Sparse Simulator Feedback

arXiv cs.AI ↗ · 2026-06-12 Cached

MDForge is an LLM agent that automates the design of molecular dynamics pipelines for host-guest binding free-energy calculations, achieving human-expert competitive results and discovering a novel high-affinity binder.

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Derivative Informed Learning of Exchange-Correlation Functionals

arXiv cs.LG ↗ · 2026-06-04 Cached

This ICML 2026 paper introduces Derivative Informed XC-Loss (DI-Loss), a training approach for machine-learned exchange-correlation functionals that incorporates first and second derivative supervision on the Grassmannian of density matrices. Across four architectures, DI-Loss reduces total-energy MAE by 66% compared to energy and density supervision alone, and improves excited-state predictions in TDDFT calculations.

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#computational-chemistry

Scalable Inference-Time Annealing with Surrogate Likelihood Estimators

Hugging Face Daily Papers ↗ · 2026-06-01

SITA (Scalable Inference-Time Annealing) introduces a method for efficiently sampling molecular Boltzmann distributions by retraining flow-based models along a temperature ladder using energy-based surrogate likelihoods, avoiding costly divergence computations. The approach achieves state-of-the-art performance on Alanine Dipeptide and Tripeptide benchmarks.

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ARMOR: An Agentic Framework for Reaction Feasibility Prediction via Adaptive Utility-aware Multi-tool Reasoning

arXiv cs.AI ↗ · 2026-05-11 Cached

The article introduces ARMOR, an agentic framework for predicting chemical reaction feasibility by adaptively prioritizing and resolving conflicts among multiple AI tools. It demonstrates superior performance over single-tool and aggregation methods on public datasets.

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Agentic Discovery of Exchange-Correlation Density Functionals

arXiv cs.AI ↗ · 2026-05-08 Cached

This paper presents an agentic system using Large Language Models to automate the discovery of exchange-correlation functionals in Density Functional Theory, achieving improvements over human-designed baselines while highlighting challenges with benchmark overfitting.

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New AI tool can generate millions of new molecules

Reddit r/ArtificialInteligence ↗ · 2026-05-07 Cached

Researchers from Universitat Rovira i Virgili published a paper in Nature Machine Intelligence introducing CoCoGraph, an AI tool that generates chemically valid novel molecules using a constrained discrete diffusion process.

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Accurate and scalable exchange-correlation with deep learning

Hugging Face Daily Papers ↗ · 2026-04-21 Cached

Microsoft Research releases Skala, a deep-learning exchange-correlation functional for DFT that achieves 2.8 kcal/mol accuracy on GMTKN55 at semi-local cost, outperforming traditional functionals across broad chemistry benchmarks.

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